Git python permission denied

«Permission Denied» trying to run Python on Windows 10

Seems as though an update on Windows 10 overnight broke Python. Just trying to run python —version returned a «Permission Denied» error. None of the three updates; KB4507453, KB4506991, or KB4509096 look like they’d be the culprit but the timing of the issue is suspicious. Rather than messing with rolling back, I’m hoping there’s a simpler fix that I’m missing. The permissions on python are «-rwxr-xr-x» and I haven’t changed anything besides letting the Windows update reboot machine after installing last night’s patches. According to the System Information, I’m running 10.0.18362 Should also note that this is happening whether I (try) to execute Python from git-bash using «run as administrator» or not, and if I try using PowerShell, it just opens the Windows store as if the app isn’t installed so I’m thinking it can’t see the contents of my /c/Users/david/AppData/Local/Microsoft/WindowsApps/ folder for some reason. I’ve also tried to reinstall Python 3.7.4, but that didn’t help either. Is there something else I should be looking at?

Probably worth checking the Microsoft website. I read somewhere, sorry can’t remember where, that other people were having problems with this update — blank screen I think. Anyway, waiting until they fix it in a day or two might turn out to be the answer.

BTW, «permissions on python are ‘-rwxr-xr-x'» is probably meaningless in Windows. That’s something fake reported by a Unix-like environment such as MSYS2 or git-bash.

Nope. This is the Python package from python.org. Same on that’s been working for years without any issue and just started acting up with the latest Windows patch.

Unfortunately, no. I’ve been living with it as I do most of my work in Docker. If I do, I’ll be sure to post my findings!

19 Answers 19

As far as I can tell, this was caused by a conflict with the version of Python 3.7 that was recently added into the Windows Store. It looks like this added two «stubs» called python.exe and python3.exe into the %USERPROFILE%\AppData\Local\Microsoft\WindowsApps folder, and in my case, this was inserted before my existing Python executable’s entry in the PATH .

Moving this entry below the correct Python folder (partially) corrected the issue.

The second part of correcting it is to type manage app execution aliases into the Windows search prompt and disable the store versions of Python altogether.

It’s possible that you’ll only need to do the second part, but on my system I made both changes and everything is back to normal now.

(Microsoft employee and CPython core developer here) You definitely only need to do the second part. There have been a couple of bugs related to upgrading apps resetting aliases which will be fixed in the next stable update, so it should be a one-time fix by then. While you’re getting Insiders updates you may need to do it a couple more times.

Also, the «Access Denied» issue is a Git Bash bug (or whoever maintains their Bash port. I’m not sure myself whose it is). And launching the Store is a new feature to help people install Python — if you’ve added it to PATH using the regular installer it should take precedence over the new redirector, but if not you’ve discovered above how to disable it.

For me I had to also add python to my path (C:\Users\YourUsernameHere\AppData\Local\Programs\Python\Python37) for git bash to find python

Adding it to my my path and moving it to the top was my solution, just like Neils did. The fact that I can’t just rename the stub for the windows store stub is pretty annoying.

Research

All of the files in %USERPROFILE%\AppData\Local\Microsoft\WindowsApps are placeholders that point to files that are actually located somewhere in C:\Program Files\WindowsApps , which happens to be denied permissions completely.

It appears I was on the right track with my statement made in my duplicate of this problem:

«Seems like they didn’t really think about the distribution method screwing with permissions!»

Permissions are screwed up royally because of the WindowsApps distribution method:

Interestingly it says that the «Users» group can read and execute files, as well as my specific user, but the Administrators group can only List folder contents for some hilariously unfathomable reason. And when trying to access the folder in File Explorer, it refuses to even show the folder contents, so there’s something fishy about that as well.

Interestingly, even though executing python in CMD works just fine, the «WindowsApps» folder does not show up when listing the files in the directory it resides in, and attempting to navigate into the folder generates a «Permission denied» error:

Attempting to change the permissions requires changing the owner first, so I changed the owner to the Administrators group. After that, I attempted to change the permissions for the Administrators group to include Full control, but it was unable to change this, because «access was denied» (duh, Micro$ucks, that’s what we’re trying to change!).

This permission error happened for so many files that I used Alt+C to quickly click «Continue» on repeat messages, but this still took too long, so I canceled the process, resulting in this warning message popping up:

And now I am unable to set the TrustedInstaller user back as the owner of the WindowsApps folder, because it doesn’t show up in the list of Users/Groups/Built-in security principles/Other objects. *

*Actually, according to this tutorial, you can swap the owner back to TrustedInstaller by typing NT Service\TrustedInstaller into the object name text box.

Solution

There is no solution. Basically, we are completely screwed. Classy move, Microsoft.

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Permission denied error in Python while using Git Bash

I require guidance or assistance in resolving my issue, which appears to be related to path or permission concerns. Here is the directory structure: I attempted to relocate, but encountered an error.

Permission denied for mv command in Git Bash for Windows

On my desktop, I have established two directories named solid/ and liquid/ . At first, liquid/ is devoid of any files. Here is the directory layout:

├── liquid ├── solid │ ├── rock.txt │ └── water.txt 

While attempting to relocate water.txt to liquid/ , an error was thrown.

$ mv water.txt /liquid mv: cannot move 'water.txt' to '/liquid': Permission denied 

After completing the procedure, the contents of your Desktop/ directory must resemble the following.

├── liquid ├── solid │ ├── rock.txt │ └── water.txt 

This behavior can be attributed to two significant problems.

If you are currently in the solid/ directory, you must specify the relative path of the liquid/ directory. As it is at the same level as the parent directory of water.txt, you can use the Unix convention of using .. (double dots) to refer to it. For further information, please refer to the definition of the dot.

# currently in solid directory $ pwd /c/Users/USER/Desktop/solid # move file to liquid directory ✔ $ mv water.txt ../liquid/ 

# git bash thinks /liquid is a file in current directory; rename operation fails ❌ $ mv water.txt /liquid # git bash thinks liquid to be in upper level; no renaming; move succeeds ✔ $ mv water.txt ../liquid/ 

Python — GIT bash : permission denied, The version provided by the Windows Store is conflicting with the installed one (if you have an installed one). Try running python3 instead of

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Git.exc.GitCommandNotFound: [WinError 5] Access is denied

Encountering an exception when attempting to clone a repository.

 Traceback (most recent call last): File "C:\Users\Selvakumar\AppData\Local\Programs\Python\Python36-32\lib\site-packages\git\cmd.py", line 622, in execute **subprocess_kwargs File "C:\Users\Selvakumar\AppData\Local\Programs\Python\Python36-32\lib\subprocess.py", line 969, in __init__ restore_signals, start_new_session) File "C:\Users\Selvakumar\AppData\Local\Programs\Python\Python36-32\lib\subprocess.py", line 1249, in _execute_child startupinfo) PermissionError: [WinError 5] Access is denied During handling of the above exception, another exception occurred: Traceback (most recent call last): File "config_console.py", line 2185, in command_line = ConfigCommandLine() File "config_console.py", line 87, in __init__ g.clone('git@github.com:Modria/Ecomm_GM.git') File "C:\Users\Selvakumar\AppData\Local\Programs\Python\Python36-32\lib\site-packages\git\cmd.py", line 463, in return lambda *args, **kwargs: self._call_process(name, *args, **kwargs) File "C:\Users\Selvakumar\AppData\Local\Programs\Python\Python36-32\lib\site-packages\git\cmd.py", line 905, in _call_process return self.execute(make_call(), **_kwargs) File "C:\Users\Selvakumar\AppData\Local\Programs\Python\Python36-32\lib\site-packages\git\cmd.py", line 625, in execute raise GitCommandNotFound(str(err)) git.exc.GitCommandNotFound: [WinError 5] Access is denied 

GitPython is functional with ssh keys accessible at C:\Users\Selvakumar.ssh when cloning from git bash. However, when attempting to use python, the ssh keys are not working. It should be noted that the ssh keys were generated without a password. Assistance is needed to resolve this issue.

The issue with PATH/variable has been confirmed by the OP.

Is the git binary referenced in your PATH?

My mistake was overlooking the need to include git.exe in the path variable for GIT_PYTHON_GIT_EXECUTABLE . The correct way to write it is \ \ \ \ \ \ C:\Program\ Files\ \(x86\)\Git\bin\git\.exe\ \ \ \ \ , which now functions properly.

The introduction of the variable can be observed in GitPython 26.

In case it’s specified, the entire directory to git executable needs to be included such as \ \ \ \ \ \ c:\Program\ Files\ \(x86\)\Git\bin\git\.exe\ \ \ \ \ on Windows or /usr/bin/git on Linux.

The GitPyhton README states:

GitPython relies on the presence and accessibility of the git executable in your PATH to perform various functions. In case the git executable is not available in your PATH , you can assist GitPython in locating it by configuring the GIT_PYTHON_GIT_EXECUTABLE= setting.

It appears to be an authorization issue. Make sure to execute your code as an administrator.

Python not working in the command line of git bash, Temporary solution. Just enter this in your git shell on windows — > alias python=’winpty python.exe’ , that is all and you are going to

Issues while trying to run python through Anaconda3 from Git Bash

Can someone please assist me in comprehending and fixing the issue at hand? It appears to be a path or permission related problem, but I require guidance and support to rectify this. My system is a Windows 10 machine and I am currently participating in a data science course. To program in Python and Jupyter Notebooks, I need to install Git Bash and Anaconda3, which I have successfully downloaded and installed. However, when attempting to run Python from git — bash, I encounter an error message stating that bash: python: command was not found. I have included a screenshot depicting the path where Anaconda3 is installed. Despite experimenting with different paths, I now receive the error message «/c/Users/Sondela/Anaconda3/python: Is a directory» (see screenshot).

The matter at hand is uncomplicated. Although you have made adjustments to the $PATH Environment Variable, it appears to be insufficient.

The error message is clear in stating that /c/Users/Sondela/Anaconda3/python is a folder, not an Executable Binary File.

By adding only the /c/Users/Sondela/Anaconda3/ folder to your $PATH environment variable, you are essentially telling Bash to execute a folder when you enter the ~/Anaconda3/python command-line.

To ensure proper configuration, make sure to add the correct path to the python executable binary file in the environment variable $PATH . This path should lead to the /c/Users/Sondela/Anaconda3/python/bin folder or a similar location. Before doing so, verify the correct location of the python executable Binary File.

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